Plant GARDEN
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TOP > About the Species(Nicotiana tabacum var. TN90) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Nicotiana tabacum

CDS Sequence

CDS ID

lcl|NW_015848567.1_cds_XP_016510452.1_23287
CDS Infomation

[gene=LOC107827766] [db_xref=GeneID:107827766] [protein=phytochrome A1-like] [protein_id=XP_016510452.1] [location=complement(join(6680..6890,7444..7734,7870..8686,8889..8910))] [gbkey=CDS]
Sequence

ATGTTGGAATTAGCATTGCAAGGGAAAGAGGAAAGAAATGTAGAGTTTGAAATAAAAACA
CATGGGCCGTCAGGAGATTCTAGTCCAATCAGCTTAATTGTGAATGCATGTGCAAGCAGG
GATGTTGGAGATAGTGTTGTGGGTGTATGTTTTATTGCTCAGGATATAACAGGACAAAAA
AATATTATGGACAAGTTCACCCGGATTGAAGGTGACTATAGAGCTATTATCCAAAATCCT
CACCCATTGATCCCACCAATATTTGGCACTGATCAATTCGGCTGGTGTTCTGAGTGGAAC
TCGGCAATGACAAAGTTAACTGGATGGCGGCGTGATGATGTTATTGATAAAATGCTATTA
GGGGAGGTTTTTGGGACACAGGCAGCTTGTTGCCGTCTCAAGAATCAAGAAGCTTTTGTA
AATTTTGGAGTTGTACTAAACAATGCTATGACTGGTCAAGAGTGTGCGAAGATATCTTTT
GGTTTCTTTGCACGTAATGGGAAATACGTAGAGTGCTTACTTTGTGTGAGCAAAAGGTTG
GATAGAGAGGGTGCAGTCACGGGACTCTTTTGTTTCCTGCAGCTTGCAAGCCATGAGCTG
CAACAAGCTCTTCACATTCAACGATTATCAGAACAAACTGCATTGAAGAGGTTGAAAGTA
TTAGCTTACATAAGGAGGCAGATTAGAAACCCTCTTTCTGGAATTATATTCTCTCGGAAA
ATGCTGGAGGGGACTAACTTGGGCGAAGAGCAGAAAAATATACTGCGTACTAGTTCCCAG
TGTCAGCGTCAGCTCAACAAAATTCTTGATGATACAGATCTTGATAGCATCATTGATGGT
TATTTGGATCTGGAGATGCTCGAGTTCAAGCTGCACGAAGTATTAGTGGCATCTATTAGT
CAAATCATGATGAAGAGCAATGGAAAGAATATAATGATTGTGAATGACATGGTTGAAGAT
CTTCTCAATGAAACTTTATACGGAGATAGTCCGAGGCTTCAACAGGTCTTAGCTAACTTT
TTGTTAGTATGCGTGAATTCTACACCAAGTGGTGGTCAGCTTAGTATTTCAGGCACATTA
ACAAAAGATCGCATAGGAGAATCTGTTCAGCTTGCTCTCTTGGAAGTCAGGATAAGCCAC
ACAGGGGGAGGAGTGCCAGAAGAACTGCTAAGCCAAATGTTCGGTACTGAGGCCGAAGCA
TCTGAAGAAGGGATCAGCTTACTCATCAGCAGAAAGCTGGTGAAGCTGATGAATGGGGAA
GTTCAGTACCTAAGAGAGGCGGGGCGATCAACTTTCATTATATCCGTTGAACTTGCAGTG
GCTACCAAGTCAAGCTGCTGA

Peptide Sequence

PEP ID

XP_016510452.1
PEP Infomation

PREDICTED: phytochrome A1-like [Nicotiana tabacum]
Sequence

MLELALQGKEERNVEFEIKTHGPSGDSSPISLIVNACASRDVGDSVVGVCFIAQDITGQK
NIMDKFTRIEGDYRAIIQNPHPLIPPIFGTDQFGWCSEWNSAMTKLTGWRRDDVIDKMLL
GEVFGTQAACCRLKNQEAFVNFGVVLNNAMTGQECAKISFGFFARNGKYVECLLCVSKRL
DREGAVTGLFCFLQLASHELQQALHIQRLSEQTALKRLKVLAYIRRQIRNPLSGIIFSRK
MLEGTNLGEEQKNILRTSSQCQRQLNKILDDTDLDSIIDGYLDLEMLEFKLHEVLVASIS
QIMMKSNGKNIMIVNDMVEDLLNETLYGDSPRLQQVLANFLLVCVNSTPSGGQLSISGTL
TKDRIGESVQLALLEVRISHTGGGVPEELLSQMFGTEAEASEEGISLLISRKLVKLMNGE
VQYLREAGRSTFIISVELAVATKSSC

Transcript Sequence

Gene sequence data has not been registered.